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GBIF and Linked Data

At the end of day two of the GBIF LSID-GUID Task Group I put together this crude diagram to summarise some of the possible links between biodiversity data and the larger linked data cloud, which I, among others, have argued is where biodiversity informatics should be heading. Here's my hastily put together diagram (created using the wonderful OmniGraffle):
Links.jpg


I've put GBIF at the centre since we're at GBIF, and it's them we are trying to convince. Yellow circles are biodiversity data sources (which aren't linked data providers (but some can me made so using, for example, my LSID proxy resolver), white circles are linked data sources.

The "sales pitch"is that if we join the linked data cloud we open up the possibility of some very powerful queries, especially once that are outside the relatively narrow scope of what GBIF and TDWG concern themselves with. Imagine being able to query biodiversity data with respect to population and economic data across countries. These are the sort of things we could realistically aim for.

On a practical level, it also means biodiversity database could devolve a lot of their tasks to other databases (via reusing identifiers). Some taxonomists have DBPedia URIs, and more could be added to Wikipedia (and so will find there way into DBPedia). Geonames provides geographic URIs which we could reuse, and so on. Within our own community we could do a better job of reusing our own identifiers, and reusing external ones (such as taxa in Wikipedia).

It's late, this is a rushed diagram, and I don't know if it's going to end up in whatever report we manage to assemble tomorrow (our final day). But I hope it captures some of the scope of what we're looking at. I know there are some problems (as have been pointed out to me on Twitter), I'll try and deal with these tomorrow.

Wikispecies RSS feed

Following on from my previous post about Wikispecies (which generated some discussion on TAXACOM) I've played some more with Wikispecies.

AS a first step I've added a Wikispecies RSS feed to my list of RSS feeds. This feed takes the original Wikispecies RSS feed for new pages (generated by the page Special:NewPages) and tries to extract some details before reformatting it as an ATOM feed. Specifically, I extract GUIDs such as IPNI and Index Fungorum identifiers, bibliographic references (which I will later parse to try and extract identifiers such as DOIs), and latitude and longitude if the Wikispecies page has type locality information. Having the later means that the RSS feed can be displayed as a map (Google Maps can take a RSS feed with geotagged items and display it on a map for you).

The map below is live, so it will show any geotagged items in the current Wikispecies feed.


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